Schedule

Week Mon. 13 Tue. 14 Wed. 15 List

	Mon. 13	Tue. 14	Wed. 15
09:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00	Microbiolomics 9:00 - 10:05 (1h05) Microbiolomics Chaired by: Sylvie Ricard-Blum › From biochemistry to validated drug targets in Plasmodium falciparum infected red blood cells - Jacky Snoep 09:00-09:45 (45min) › Intruder alert! Towards a systems-biology based counterstrike against infectious diseases without collateral damage - Jurgen Haanstra, University of Groningen, University Medical Center Groningen, VU University Amsterdam, Amsterdam 09:45-10:05 (20min) Coffee break 10:05 - 10:35 (30min) Coffee break Microbiolomics 10:35 - 12:00 (1h25) Microbiolomics Chaired by: Sylvie Ricard-Blum › Alzheimer's disease: analysis of a mathematical model including the role of prion - Erwan Hingant, Centro de Investigación en Ingeniería Matemática 10:35-10:55 (20min) › On-line knowledge of glycans involved in infection - Frederique Lisacek, Swiss Institute of Bioinformatics 10:55-11:15 (20min) › Host-pathogen interactions from a systems perspective : studying bacterial virulence and host response to viral infection - Jason McDermott 11:15-12:00 (45min) Lunch 12:00 - 14:00 (2h) Lunch Immune response 14:00 - 15:25 (1h25) Immune response Chaired by: Jacqueline Marvel › Viral and immune system co-evolution - Yoram Louzoun 14:00-14:45 (45min) › Modelling of immune response to a respiratory virus targeting pulmonary macrophages : exploration of the host susceptibility and viral virulence. - Natacha Go, INRA - Mathématiques et Informatique Appliquées, Bioagression, Epidémiologie et Analyse de Risques 14:45-15:05 (20min) › RNA-Seq based characterization of long non-coding RNA involved in respiratory viruses pathogenesis - Laurence Josset, University of Washington 15:05-15:25 (20min) Coffee break and poster session 15:25 - 16:35 (1h10) Coffee break and poster session Immune response 16:35 - 17:40 (1h05) Immune response Chaired by: Jacqueline Marvel › Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes - Frederik Graw, Center for Modeling and Simulation in the Bioscienes, Heidelberg University, Theoretical Biology and Biophysics, Los Alamos National Laboratory 16:35-16:55 (20min) › Systems Immunology - From Cells, to Mice, to Humans - Ron Germain 16:55-17:40 (45min)	Coffee break 10:00 - 10:25 (25min) Coffee break Immune response 10:25 - 11:50 (1h25) Immune response Chaired by: Ron Germain › Computational modeling of FcεRI signaling during mast cell activation. - Anna Niarakis, IBENS (CNRS UMR 8197 / INSERM U1024), Paris, France 10:25-10:45 (20min) › Predicting pathogen-specific CD8 T cell immune response from a modelling approach. - Christophe Arpin, CIRI 10:45-11:05 (20min) › Hepatitis C: From sequences to viral dynamics - Alan Perelson 11:05-11:50 (45min) Lunch 11:50 - 14:00 (2h10) Lunch Evolution of pathogens 14:00 - 15:25 (1h25) Evolution of pathogens Chaired by: Daniel Kahn › The origins of human malaria - Paul Sharp 14:00-14:45 (45min) › Molecular tinkering drives the evolution of bacterial weapons: the origin of a direct protein delivery system from the bacterial flagellum - Sophie Abby, Génomique évolutive des microbes 14:45-15:05 (20min) › Lentiviral large-scale sequence optimization: another way towards an HIV vaccine? - Marc Bailly-Bechet, Laboratoire de Biométrie et Biologie Evolutive 15:05-15:25 (20min) Coffee break and poster session 15:25 - 16:35 (1h10) Coffee break and poster session Evolution of pathogens 16:35 - 17:40 (1h05) Evolution of pathogens Chaired by: Daniel Kahn › Epidemiological consequences of HIV immune escape - Christiaan van Dorp, Universiteit Utrecht, National Institute for Public Health and the Environment 16:35-16:55 (20min) › From genomics to epidemiology of influenza - Michael Lässig 16:55-17:40 (45min)	Epidemiology 9:00 - 10:05 (1h05) Epidemiology › The evolution of HIV-1 virulence - Christophe Fraser 09:00-09:45 (45min) › On the extinction of Continuous State Branching Processes with catastrophes - Charline Smadi, CMAP 09:45-10:05 (20min) Coffee break 10:05 - 10:35 (30min) Coffee break Epidemiology 10:35 - 12:00 (1h25) Epidemiology › Mechanistic Model to Characterize and Predict Fecal Excretion of Ciprofloxacin Resistant Enterobacteria with Various Dosage Regimens - Jeremie Guedj, INSERM U738 10:35-10:55 (20min) › The basic reproduction number of epidemics in periodic or random environments - Nicolas Bacaer, IRD 10:55-11:15 (20min) › Mining networks of human contact with wearable sensors - Alain Barrat 11:15-12:00 (45min)

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